Tag Archives: replication

Good Modelling Takes a Lot of Time and Many Eyes

By Bruce Edmonds

(A contribution to the: JASSS-Covid19-Thread)

It is natural to want to help in a crisis (Squazzoni et al. 2020), but it is important to do something that is actually useful rather than just ‘adding to the noise’. Usefully modelling disease spread within complex societies is not easy to do – which essentially means there are two options:

  1. Model it in a fairly abstract manner to explore ideas and mechanisms, but without the empirical grounding and validation needed to reliably support policy making.
  2. Model it in an empirically testable manner with a view to answering some specific questions and possibly inform policy in a useful manner.

Which one does depends on the modelling purpose one has in mind (Edmonds et al. 2019). Both routes are legitimate as long as one is clear as to what it can and cannot do. The dangers come when there is confusion –  taking the first route whilst giving policy actors the impression one is doing the second risks deceiving people and giving false confidence (Edmonds & Adoha 2019, Elsenbroich & Badham 2020). Here I am only discussing the second, empirically ambitious route.

Some of the questions that policy-makers might want to ask, include, what might happen if we: close the urban parks, allow children of a specific range of ages go to school one day a week, cancel 75% of the intercity trains, allow people to go to beauty spots, visit sick relatives in hospital or test people as they recover and give them a certificate to allow them to go back to work?

To understand what might happen in these scenarios would require an agent-based model where agents made the kind of mundane, every-day decisions of where to go and who to meet, such that the patterns and outputs of the model were consistent with known data (possibly following the ‘Pattern-Oriented Modelling’ of Grimm & Railsback 2012). This is currently lacking. However this would require:

  1. A long-term, iterative development (Bithell 2018), with many cycles of model development followed by empirical comparison and data collection. This means that this kind of model might be more useful for the next epidemic rather than the current one.
  2. A collective approach rather than one based on individual modellers. In any very complex model it is impossible to understand it all – there are bound to be small errors and programmed mechanisms will subtly interaction with others. As (Siebers & Venkatesan 2020) pointed out this means collaborating with people from other disciplines (which always takes time to make work), but it also means an open approach where lots of modellers routinely inspect, replicate, pull apart, critique and play with other modellers’ work – without anyone getting upset or feeling criticised. This does involve an institutional and normative embedding of good modelling practice (as discussed in Squazzoni et al. 2020) but also requires a change in attitude – from individual to collective achievement.

Both are necessary if we are to build the modelling infrastructure that may allow us to model policy options for the next epidemic. We will need to start now if we are to be ready because it will not be easy.

References

Bithell, M. (2018) Continuous model development: a plea for persistent virtual worlds, Review of Artificial Societies and Social Simulation, 22nd August 2018. https://rofasss.org/2018/08/22/mb

Edmonds, B. & Adoha, L. (2019) Using agent-based simulation to inform policy – what could possibly go wrong? In Davidson, P. & Verhargen, H. (Eds.) (2019). Multi-Agent-Based Simulation XIX, 19th International Workshop, MABS 2018, Stockholm, Sweden, July 14, 2018, Revised Selected Papers. Lecture Notes in AI, 11463, Springer, pp. 1-16. DOI: 10.1007/978-3-030-22270-3_1

Edmonds, B., Le Page, C., Bithell, M., Chattoe-Brown, E., Grimm, V., Meyer, R., Montañola-Sales, C., Ormerod, P., Root, H., & Squazzoni, F. (2019). Different Modelling Purposes. Journal of Artificial Societies and Social Simulation, 22(3), 6. <http://jasss.soc.surrey.ac.uk/22/3/6.html> doi: 10.18564/jasss.3993

Elsenbroich, C. and Badham, J. (2020) Focussing on our Strengths. Review of Artificial Societies and Social Simulation, 12th April 2020. https://rofasss.org/2020/04/12/focussing-on-our-strengths/

Grimm, V., & Railsback, S. F. (2012). Pattern-oriented modelling: a ‘multi-scope’for predictive systems ecology. Philosophical Transactions of the Royal Society B: Biological Sciences, 367(1586), 298-310. doi:10.1098/rstb.2011.0180

Siebers, P-O. and Venkatesan, S. (2020) Get out of your silos and work together. Review of Artificial Societies and Social Simulation, 8th April 2020. https://rofasss.org/2020/0408/get-out-of-your-silos

Squazzoni, F., Polhill, J. G., Edmonds, B., Ahrweiler, P., Antosz, P., Scholz, G., Chappin, É., Borit, M., Verhagen, H., Giardini, F. and Gilbert, N. (2020) Computational Models That Matter During a Global Pandemic Outbreak: A Call to Action. Journal of Artificial Societies and Social Simulation, 23(2):10. <http://jasss.soc.surrey.ac.uk/23/2/10.html>. doi: 10.18564/jasss.4298


Edmonds, B. (2020) Good Modelling Takes a Lot of Time and Many Eyes. Review of Artificial Societies and Social Simulation, 13th April 2020. https://rofasss.org/2020/04/13/a-lot-of-time-and-many-eyes/


 

Vision for a more rigorous “replication first” modelling journal

By David Hales

A proposal for yet another journal? My first reaction to any such suggestion is to argue that we already have far too many journals. However, hear me out.

My vision is for a modelling journal that is far more rigorous than what we currently have. It would be aimed at work in which a significant aspect of the result is derived from the output of a complex system type computer model in an empirical way.

I propose that the journal would incorporate, as part of the reviewing process, at least one replication of the model by an independent reviewer. Hence models would be verified as independently replicated before being published.

In addition the published article would include an appendix detailing the issues raised during the replication process.

Carrying out such an exercise would almost certainly lead to clarifications of the original article such that it would easier to replicate by others and give more confidence in the results. Both readers and authors would gain significantly from this.

I would be much more willing to take modelling articles seriously if I knew they had already been independently replicated.

Here is a question that immediately springs to mind: replicating a model is a time consuming and costly business requiring significant expertise. Why would a reviewer do this?

One possible solution would be to provide an incentive in the following form. Final articles published in the journal would include the replicators as co-authors of the paper – specifically credited with the independent replication work that they write up in the appendix.

This would mean that good, clear and interesting initial articles would be desirable to replicate since the reviewer / replicator would obtain citations.

This could be a good task for an able graduate student allowing them to gain experience, contacts and citations.

Why would people submit good work to such a journal? This is not as easy to answer. It would almost certainly mean more work from their perspective and a time delay (since replication would almost certainly take more time than traditional review). However there is the benefit of actually getting a replication of their model and producing a final article that others would be able to engage with more easily.

Also I think it would be necessary, given the above aspects, to put quite a high bar on what is accepted for review / replication in the first place. Articles reviewed would have to present significant and new results in areas of fairly wide interest. Hence incremental or highly specific models would be ruled out. Also articles that did not contain enough detail to even attempt a replication would be rejected on that basis. Hence one can envisage a two stage review process where the editors decide if the submitted paper is “right” for a full replication review before soliciting replications.

My vision is of a low output, high quality, high initial rejection journal. Perhaps publishing 3 articles every 6 months. Ideally this would support a reputation for high quality over time.


Hales, D. (2018) Vision for a more rigorous “replication first” modelling journal. Review of Artificial Societies and Social Simulation, 5th November 2018. https://rofasss.org/2018/11/05/dh/